Sequence Similarity Clusters for the Entities in PDB 4QV4

Entity #1 | Chains: A,O
Proteasome subunit alpha type-2 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 88 309 11
95 % 88 309 23 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 88 309 26
70 % 88 309 36
50 % 88 309 70
40 % 98 367 42
30 % 589 2279 2
Entity #10 | Chains: J,X
Proteasome subunit beta type-4 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 88 305 18
95 % 88 305 30 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 88 305 32
70 % 88 305 42
50 % 88 305 75
40 % 98 361 48
30 % 98 363 49
Entity #11 | Chains: K,Y
Proteasome subunit beta type-5 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 12705
95 % 72 247 62 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 72 247 68
70 % 95 312 28
50 % 95 316 63
40 % 95 316 80
30 % 98 339 30
Entity #12 | Chains: L,Z
Proteasome subunit beta type-6 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 76 273 21
95 % 88 306 26 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 88 306 28
70 % 88 306 37
50 % 88 306 71
40 % 88 329 79
30 % 88 329 85
Entity #13 | Chains: M,a
Proteasome subunit beta type-7 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 88 306 16
95 % 88 306 27 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 88 306 29
70 % 88 306 38
50 % 88 306 73
40 % 88 306 90
30 % 88 306 90
Entity #14 | Chains: N,b
Proteasome subunit beta type-1 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 88 306 15
95 % 88 306 29 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 88 306 30
70 % 88 306 40
50 % 88 306 74
40 % 88 310 87
30 % 88 310 88
Entity #2 | Chains: B,P
Proteasome subunit alpha type-3 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 88 309 10
95 % 88 309 21 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.3
PDBFlex
90 % 88 309 24
70 % 88 309 35
50 % 98 365 36
40 % 98 367 43
30 % 590 2279 2
Entity #3 | Chains: C,Q
Proteasome subunit alpha type-4 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 88 309 9
95 % 88 309 19 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 88 309 22
70 % 88 309 32
50 % 98 364 37
40 % 101 394 18
30 % 591 2279 2
Entity #4 | Chains: D,R
Proteasome subunit alpha type-5 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 87 308 13
95 % 88 309 24 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.2
PDBFlex
90 % 88 310 21
70 % 88 310 31
50 % 98 366 35
40 % 98 366 44
30 % 592 2279 2
Entity #5 | Chains: E,S
Proteasome subunit alpha type-6 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 88 307 17
95 % 88 309 22 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 88 309 25
70 % 88 309 33
50 % 88 309 69
40 % 88 309 88
30 % 593 2279 2
Entity #6 | Chains: F,T
Probable proteasome subunit alpha type-7 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 85 264 25
95 % 85 264 45 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 85 264 49
70 % 85 264 60
50 % 85 264 92
40 % 85 264 107
30 % 85 264 107
Entity #7 | Chains: G,U
Proteasome subunit alpha type-1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 88 309 12
95 % 88 309 20 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 88 309 23
70 % 88 309 34
50 % 98 362 39
40 % 98 368 41
30 % 594 2279 2
Entity #8 | Chains: H,V
Proteasome subunit beta type-2 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 77 240 42
95 % 85 285 37 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 87 296 38
70 % 87 296 46
50 % 98 339 53
40 % 98 339 69
30 % 98 339 71
Entity #9 | Chains: I,W
Proteasome subunit beta type-3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 88 306 14
95 % 88 306 28 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 88 306 31
70 % 88 306 39
50 % 98 358 42
40 % 98 364 45
30 % 98 364 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures