Sequence Similarity Clusters for the Entities in PDB 4Q4X

Entity #1 | Chains: 1
Coxsackievirus capsid protein VP1 protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 18669
95 % 2 5 16617 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 2 5 16336
70 % 2 7 11696
50 % 2 43 1546
40 % 2 164 223
30 % 2 203 205
Entity #2 | Chains: 2
Coxsackievirus capsid protein VP2 protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 17396
95 % 2 5 16330 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 2 5 16076
70 % 2 49 1319
50 % 2 201 198
40 % 2 201 211
30 % 2 214 213
Entity #3 | Chains: 3
Coxsackievirus capsid protein VP3 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 17743
95 % 2 5 16618 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 5 16800
70 % 2 49 1300
50 % 2 213 177
40 % 2 215 190
30 % 2 256 125
Entity #4 | Chains: 4
Coxsackievirus capsid protein VP4 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 25748
95 % 2 4 18239 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 4 20579
70 % 2 77 758
50 % 2 139 431
40 % 2 139 451
30 % 2 139 473

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures