Sequence Similarity Clusters for the Entities in PDB 4PV1

Entity #1 | Chains: A
Cytochrome b6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 6699
95 % 3 12 5285 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 3 12 5325
70 % 3 13 4970
50 % 3 13 4800
40 % 3 13 4685
30 % 3 13 4502
Entity #2 | Chains: B
Cytochrome b6-f complex subunit 4 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 12539
95 % 1 9 7281 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 3 12 5457
70 % 3 13 5224
50 % 3 13 5047
40 % 3 13 4762
30 % 3 13 4712
Entity #3 | Chains: C
Apocytochrome f protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 6686
95 % 1 9 7565 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 1 9 7533
70 % 2 11 5937
50 % 2 12 5342
40 % 2 12 5195
30 % 2 12 4966
Entity #4 | Chains: D
Cytochrome b6-f complex iron-sulfur subunit protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 12470
95 % 1 9 7516 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 1 9 7489
70 % 3 12 5633
50 % 3 12 5424
40 % 3 12 5296
30 % 3 12 5044
Entity #5 | Chains: E
Cytochrome b6-f complex subunit 6 protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 6653
95 % 1 9 7246 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 1 9 7236
70 % 1 9 7105
50 % 1 9 6704
40 % 1 9 6487
30 % 1 9 6077
Entity #6 | Chains: F
Cytochrome b6-f complex subunit 7 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 6919
95 % 1 9 7592 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 1 9 7563
70 % 3 12 5574
50 % 3 12 5499
40 % 3 12 5367
30 % 3 12 5108
Entity #7 | Chains: G
Cytochrome b6-f complex subunit 5 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 6918
95 % 1 9 7460 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.3
PDBFlex
90 % 1 9 7435
70 % 3 12 5262
50 % 3 12 5090
40 % 3 12 4994
30 % 3 12 4772
Entity #8 | Chains: H
Cytochrome b6-f complex subunit 8 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 6896
95 % 1 9 7557 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 1 9 7525
70 % 3 12 5273
50 % 3 13 4807
40 % 3 13 4691
30 % 3 13 4510

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures