Sequence Similarity Clusters for the Entities in PDB 4PU3

Entity #1 | Chains: A,B
Toxin-antitoxin system toxin HipA family protein, length: 454 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23627
95 % 2 3 16918 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.9
PDBFlex
90 % 2 3 16646
70 % 2 3 15579
50 % 2 3 14052
40 % 2 3 13056
30 % 2 3 11869
Entity #2 | Chains: C,D
Toxin-antitoxin system antidote transcriptional repressor Xre family protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10828
95 % 3 4 10961 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.2
PDBFlex
90 % 3 4 10693
70 % 3 4 10429
50 % 3 4 9476
40 % 3 4 8994
30 % 3 4 8325
Entity #3 | Chains: Q
Operator DNA dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: P
Operator DNA dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures