Sequence Similarity Clusters for the Entities in PDB 4PTU

Entity #1 | Chains: A
Antibody pn132p2C05, light chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39242
95 % 1 2 30677 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 6 236 78
70 % 46 2391 2
50 % 57 3030 2
40 % 57 3030 2
30 % 123 6153 1
Entity #2 | Chains: B
Antibody pn132p2C05, heavy chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 49085
95 % 1 2 32019 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 30713
70 % 57 2928 1
50 % 64 3079 1
40 % 64 3079 1
30 % 124 6153 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures