Sequence Similarity Clusters for the Entities in PDB 4PGB

Entity #1 | Chains: A,D
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 49 508
95 % 63 66 484 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 63 66 512
70 % 762 797 6
50 % 764 802 8
40 % 807 846 9
30 % 823 869 13
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 133 141 109
95 % 249 268 69 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 249 268 74
70 % 982 1045 4
50 % 1001 1069 4
40 % 1001 1069 4
30 % 1001 1069 7
Entity #3 | Chains: C,F
Sendai virus nucleoprotein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures