Sequence Similarity Clusters for the Entities in PDB 4P2Y

Entity #1 | Chains: A
Advanced glycosylation end product-specific receptor protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21098
95 % 1 3 20181 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 4.5
PDBFlex
90 % 1 3 18485
70 % 1 3 17144
50 % 1 3 17523
40 % 1 3 15101
30 % 1 3 13672
Entity #2 | Chains: B
Protein S100-A6 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66841
95 % 5 7 9371 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 2.5
PDBFlex
90 % 5 12 4117
70 % 5 12 4096
50 % 43 94 295
40 % 53 107 218
30 % 53 107 226

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures