Sequence Similarity Clusters for the Entities in PDB 4OO6

Entity #1 | Chains: A
Transportin-1 protein, length: 854 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26029
95 % 1 18 2921 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 3.8
PDBFlex
90 % 1 18 3010
70 % 1 18 3021
50 % 1 18 3015
40 % 1 18 3088
30 % 1 18 3047
Entity #2 | Chains: B
RNA-binding protein 39 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61203
95 % 1 1 58777
90 % 1 1 55379
70 % 1 1 48207
50 % 1 1 42776
40 % 1 1 37575
30 % 1 1 33113

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures