Sequence Similarity Clusters for the Entities in PDB 4ONF

Entity #1 | Chains: H
3D6 FAB ANTIBODY HEAVY CHAIN protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 56423
95 % 1 2 42209 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 2.2
PDBFlex
90 % 1 2 40153
70 % 421 2882 1
50 % 446 3027 1
40 % 446 3027 1
30 % 880 6051 1
Entity #2 | Chains: L
3D6 FAB ANTIBODY LIGHT CHAIN protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 55668
95 % 11 33 1390 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.0
PDBFlex
90 % 12 55 744
70 % 342 2351 2
50 % 429 2982 2
40 % 429 2982 2
30 % 881 6051 1
Entity #3 | Chains: P
Amyloid beta A4 protein protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures