Sequence Similarity Clusters for the Entities in PDB 4O2B

Entity #1 | Chains: A,C
Tubulin alpha-1B chain protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 168 43
95 % 43 262 13 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 43 265 15
70 % 43 281 13
50 % 43 281 18
40 % 85 562 3
30 % 85 573 8
Entity #2 | Chains: B,D
Tubulin beta-2B chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 108 179
95 % 42 260 14 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.7
PDBFlex
90 % 43 273 8
70 % 43 281 12
50 % 43 281 17
40 % 86 562 3
30 % 86 573 8
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 104 418
95 % 33 118 456 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.9
PDBFlex
90 % 33 118 482
70 % 33 118 521
50 % 33 118 545
40 % 33 118 586
30 % 33 118 603
Entity #4 | Chains: F
Tubulin-tyrosine ligase protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 104 417
95 % 32 104 541 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 0.8
PDBFlex
90 % 32 104 568
70 % 32 107 571
50 % 32 107 615
40 % 32 107 652
30 % 32 107 668

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5IYZ 4 F TUBULIN-TYROSINE LIGASE 9031
2 4I4T 4 F Tubulin Tyrosine ligase, TTL 9031
3 5LXT 4 F TUBULIN-TYROSINE LIGASE 9031
4 6QTN 4 F Tubulin-Tyrosine Ligase 9031
5 4IHJ 4 F TUBULIN TYROSINE LIGASE, TTL 9031
6 4TV9 4 F Uncharacterized protein 9031
7 5M7E 4 F Tubulin-Tyrosine Ligase 9031
8 5EZY 4 F Uncharacterized protein 9031
9 6FKL 4 F Tubulin tyrosine ligase 9031
10 6FJM 4 F Tubulin tyrosine ligase 9031
11 5M8G 4 F Tubulin-Tyrosine Ligase 9031
12 5NFZ 4 F Tubulin-Tyrosine Ligase 9031
13 4TUY 4 F Tubulin-Tyrosine Ligase 9031
14 6FKJ 4 F Tubulin tyrosine ligase 9031
15 5LA6 4 F Tubulin-Tyrosine Ligase 9031
16 6F7C 4 F Tubulin tyrosine ligase 9031
17 4I55 4 F Tubulin tyrosine ligase, TTL 9031
18 4TV8 4 F Tubulin-Tyrosine Ligase 9031
19 4O4H 4 F Tubulin-tyrosine ligase 9031
20 5NG1 4 F Tubulin-Tyrosine Ligase 9031
21 5OSK 4 F Tubulin-Tyrosine Ligase 9031
22 5M8D 4 F Tubulin-Tyrosine Ligase 9031
23 5M7G 4 F Tubulin-Tyrosine Ligase 9031
24 5YL2 4 F Tubulin tyrosine ligase 9031
25 4O4L 4 F Tubulin-tyrosine ligase 9031
26 5LXS 4 F Tubulin tyrosine ligase 9031
27 5JQG 4 F Uncharacterized protein 9031
28 5JH7 4 F Tubulin Tyrosine Ligase 9031
29 5J2T 4 F TUBULIN-TYROSINE LIGASE 9031
30 5XKG 4 F Tubulin tyrosine ligase 9031
31 5JCB 4 F Tubulin-Tyrosine Ligase 9031
32 4O2B 4 F Tubulin-tyrosine ligase 9031
33 4O4J 4 F Tubulin-tyrosine ligase 9031
34 5MF4 4 F Uncharacterized protein 9031
35 5CB4 4 F Uncharacterized protein 9031
36 5JVD 4 F Tubulin beta-2B chain 9031
37 5XKH 4 F Uncharacterized protein 9031
38 6FII 4 F Tubulin tyrosine ligase 9031
39 6O5M 4 F Tubulin Tyrosine Ligase 9031
40 5XP3 4 F Uncharacterized protein 9031
41 4I50 4 F Tubulin Tyrosine Ligase, TTL 9031
42 6S9E 4 F Tubulin Tyrosine ligase 9031
43 6BR1 4 F Tubulin tyrosine ligase 9031
44 6QQN 4 F Tubulin-Tyrosine Ligase 9031
45 4O4I 4 F Tubulin-tyrosine ligase 9031
46 5LOV 4 F Tubulin-tyrosine ligase 9031
47 5LYJ 4 F Tubulin-tyrosine ligase 9031
48 5OV7 4 F Uncharacterized protein 9031
49 6NNG 4 F Tubulin Tyrosine Ligase 9031
50 5CA1 4 F Uncharacterized protein 9031
51 4ZOL 4 F Tubulin-tyrosine ligase 9031
52 5XLZ 4 F Tubulin Tyrosine ligase 9031
53 6HX8 4 F Tubulin-Tyrosine Ligase 9031
54 6GJ4 4 F Tubulin tyrosine ligase 9031
55 6GF3 5 F Tubulin tyrosine ligase 9031
56 4ZI7 4 F Tubulin-Tyrosine Ligase 9031
57 6FJF 4 F Tubulin tyrosine ligase 9031
58 5BMV 4 F Uncharacterized protein 9031
59 6BRF 4 F Tubulin tyrosine ligase 9031
60 6EG5 4 F Tubulin tyrosine ligase 9031
61 4O2A 4 F TUBULIN-TYROSINE LIGASE 9031
62 5KX5 4 F TTL protein 9031
63 4ZHQ 4 F Tubulin-Tyrosine Ligase 9031
64 5CA0 4 F Uncharacterized protein 9031
65 5NJH 4 F tubulin tyrosine ligase TTL 9031
66 5O7A 4 F Uncharacterized protein 9031
67 5FNV 4 F TUBULIN TYROSINE LIGASE 9823
68 5GON 4 F Uncharacterized protein 9031
69 6BS2 4 F Tubulin tyrosine ligase 9031
70 4YJ2 4 F Tubulin-tyrosine ligase 9031
71 6GZE 4 F Tubulin tyrosine ligase 9031
72 4IIJ 4 F Tubulin tyrosine ligase, TTL 9031
73 5XAF 4 F TTL Protein 9031
74 5J2U 4 F Tubulin beta-2B chain 9913
75 6KNZ 4 F Tubulin tyrosine ligase 9031
76 5YZ3 4 F Tubulin Tyrosine Ligase 9031
77 5H74 4 F Uncharacterized protein UNP residues 1-378 9031
78 6N47 4 F Uncharacterized protein 9031
79 6O61 4 F Tubulin Tyrosine Ligase 9031
80 5XAG 4 F Tubulin tyrosine ligase 9031
81 5Z4P 4 F Tubulin tyrosine ligase 9031
82 6BRY 4 F Tubulin tyrosine ligase 9031
83 6K9V 4 F Tubulin tyrosine ligase 9031
84 6I5C 4 F TUBULIN-TYROSINE LIGASE 9031
85 5XKE 4 F Uncharacterized protein 9031
86 5C8Y 4 F Uncharacterized protein 9031
87 5YL4 4 F Tubulin tyrosine ligase 9031
88 6JCJ 4 F Tubulin tyrosine ligase 9031
89 6D88 4 F Tubulin tyrosine ligase 9031
90 5YLJ 4 F Tubulin tyrosine ligase 9031
91 3TIG 1 A Ttl protein 8364
92 5XLT 4 F Tubulin tyrosine ligase 9031
93 5ZXH 4 F Tubulin tyrosine ligase 9031
94 3TII 1 A, B Ttl protein 8364
95 5XKF 4 F Tubulin tyrosine ligase 9031
96 6AGK 4 F Tubulin tyrosine ligase 9031
97 5H7O 4 F Tubulin tyrosine ligase 9031
98 5XIW 4 F Tubulin tyrosine ligase 9031
99 5XHC 4 F TUBULIN TYROSINE LIGASE 9031
100 6O5N 4 F Tubulin Tyrosine Ligase 9031
101 5XI5 4 F Tubulin tyrosine ligase 9031
102 5Z4U 4 F Tubulin tyrosine ligase 9031
103 5YLS 4 F Tubulin tyrosine ligase 9031
104 3TIN 1 A Ttl protein 8364
105 5XI7 4 F Tubulin tyrosine ligase 9031
106 5LP6 4 F Uncharacterized protein Stretches between 103-124; 154-160;177-179; 364- 371; 382-385 were not traceable in the electron density 9031
107 4YJ3 4 F Tubulin-tyrosine ligase 9031