Sequence Similarity Clusters for the Entities in PDB 4O2B

Entity #1 | Chains: A,C
Tubulin alpha-1B chain protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 168 43
95 % 43 262 13 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 43 265 15
70 % 43 281 13
50 % 43 281 18
40 % 85 562 3
30 % 85 573 8
Entity #2 | Chains: B,D
Tubulin beta-2B chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 108 178
95 % 42 260 14 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.7
PDBFlex
90 % 43 273 8
70 % 43 281 12
50 % 43 281 17
40 % 86 562 3
30 % 86 573 8
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 104 414
95 % 33 118 454 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.9
PDBFlex
90 % 33 118 485
70 % 33 118 518
50 % 33 118 542
40 % 33 118 585
30 % 33 118 600
Entity #4 | Chains: F
Tubulin-tyrosine ligase protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 104 415
95 % 32 104 541 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 0.8
PDBFlex
90 % 32 104 570
70 % 32 107 574
50 % 32 107 611
40 % 32 107 649
30 % 32 107 665

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5IYZ 3 E Stathmin-4 10116
2 4I4T 3 E Stathmin-4 10116
3 5LXT 3 E Stathmin-4 10116
4 6QTN 3 E Stathmin-4 10116
5 4IHJ 3 E Stathmin-4 10116
6 4TV9 3 E Stathmin-4 STATHMIN-LIKE DOMAIN, UNP Residues 49-189 10116
7 5M7E 3 E Stathmin-4 10116
8 5EZY 3 E Stathmin-4 UNP residues 49-189 10116
9 6FKL 3 E Stathmin-4 10116
10 6FJM 3 E Stathmin-4 10116
11 5M8G 3 E Stathmin-4 10116
12 5NFZ 3 E Stathmin-4 10116
13 4TUY 3 E Stathmin-4 STATHMIN-LIKE DOMAIN, Residues 49-189 10116
14 6FKJ 3 E Stathmin-4 10116
15 5LA6 3 E Stathmin-4 10116
16 6F7C 3 E Stathmin-4 10116
17 4I55 3 E Stathmin-4 10116
18 4TV8 3 E Stathmin-4 UNP Residues 49-189 10116
19 4O4H 3 E Stathmin-4 UNP residues 49-189 10116
20 5NG1 3 E Stathmin-4 10116
21 5OSK 3 E Stathmin-4 10116
22 5M8D 3 E Stathmin-4 10116
23 5M7G 3 E Stathmin-4 10116
24 5YL2 3 E Stathmin-4 10116
25 4O4L 3 E Stathmin-4 UNP residues 49-189 10116
26 5LXS 3 E Stathmin-4 10116
27 5JQG 3 E Stathmin-4 UNP residues 49-189 10116
28 5JH7 3 E Stathmin-4 10116
29 5J2T 3 E Stathmin-4 10116
30 5XKG 3 E Stathmin-4 UNP RESIDUES 49-189 10116
31 5JCB 3 E Stathmin UNP RESIDUES 49-189 9823
32 4O2B 3 E Stathmin-4 10116
33 4O4J 3 E Stathmin-4 UNP residues 49-189 10116
34 5MF4 3 E Stathmin-4 10116
35 5CB4 3 E Stathmin-4 UNP RESIDUES 49-189 10116
36 5JVD 3 E Stathmin-4 10116
37 5XKH 3 E Stathmin-4 UNP RESIDUES 49-189 10116
38 6FII 3 E Stathmin-4 10116
39 6O5M 3 E Stathmin-4 9606
40 5XP3 3 E Stathmin-4 UNP RESIDUES 49-189 10116
41 4I50 3 E Stathmin-4 10116
42 6BR1 3 E Stathmin-4 9606
43 6QQN 3 E Stathmin-4 10116
44 4O4I 3 E Stathmin-4 UNP residues 49-189 10116
45 5LOV 3 E Stathmin-4 10116
46 5LYJ 3 E Stathmin-4 10116
47 5OV7 3 E Stathmin-4 10116
48 6NNG 3 E Stathmin-4 9606
49 5CA1 3 E Stathmin-4 UNP RESIDUES 49-189 10116
50 4ZOL 3 E Stathmin-4 UNP residues 49-189 10116
51 5XLZ 3 E Stathmin-4 UNP residues 49-189 10116
52 6HX8 3 E Stathmin-4 10116
53 6GJ4 3 E Stathmin-4 10116
54 6GF3 4 E Stathmin-4 10116
55 4ZI7 3 E Stathmin-4 UNP residues 49-189 10116
56 6FJF 3 E Stathmin-4 10116
57 5BMV 3 E Stathmin-4 UNP RESIDUES 49-189 10116
58 6BRF 3 E Stathmin-4 9606
59 6EG5 3 E Stathmin-4 10116
60 4O2A 3 E Stathmin-4 10116
61 4ZHQ 3 E Stathmin-4 UNP residues 49-189 10116
62 5CA0 3 E Stathmin-4 UNP RESIDUES 49-189 10116
63 5NJH 3 E Stathmin-4 10116
64 5O7A 3 E Stathmin-4 10116
65 5FNV 3 E STATHMIN-4 STATHMIN-LIKE DOMAIN, RESIDUES 49-189 9823
66 5GON 3 E Stathmin-4 UNP RESIDUES 50-185 10116
67 6BS2 3 E Stathmin-4 10116
68 4IIJ 3 E Stathmin-4 10116
69 5J2U 3 E Stathmin-4 10116
70 6KNZ 3 E Stathmin-4 10116
71 5YZ3 3 E Stathmin-4 SLD 10116
72 5H74 3 E Stathmin-4 UNP residues 49-189 10116
73 6N47 3 E Stathmin-4 10116
74 6O61 3 E Stathmin-4 9606
75 6BRY 3 E Stathmin-4 9606
76 6K9V 3 E Stathmin-4 10116
77 6I5C 3 E Stathmin-4 10116
78 5XKE 3 E Stathmin-4 UNP RESIDUES 49-189 10116
79 5C8Y 3 E Stathmin-4 UNP RESIDUES 49-189 10116
80 5YL4 3 E Stathmin-4 UNP residues 49-189 10116
81 6JCJ 3 E Stathmin-4 10116
82 6D88 3 E Stathmin-4 10116
83 5YLJ 3 E Stathmin-4 10116
84 5XLT 3 E Stathmin-4 UNP residues 49-189 10116
85 5ZXH 3 E Stathmin-4 10116
86 5XKF 3 E Stathmin-4 UNP RESIDUES 49-189 10116
87 6AGK 3 E Stathmin-4 10116
88 5H7O 3 E Stathmin-4 UNP residues 76-216 10116
89 5XIW 3 E Stathmin-4 UNP RESIDUES 49-189 10116
90 6O5N 3 E Stathmin-4 9606
91 5Z4U 3 E Stathmin-4 10116
92 5YLS 3 E Stathmin-4 UNP residues 49-189 10116
93 5LP6 3 E Stathmin-4 Stretches between 1-3; 28-42;141-144 were not traceable in the electron density 10116
94 3HKE 3 E Stathmin-4 RB3 stathmin-like domain 10116
95 3HKB 3 E Stathmin-4 RB3 stathmin-like domain 10116
96 3HKD 3 E Stathmin-4 RB3 stathmin-like domain 10116
97 3HKC 3 E Stathmin-4 RB3 stathmin-like domain 10116
98 1SA0 3 E Stathmin 4 10116
99 3N2G 3 E Stathmin-4 UNP residues 49-189 10116
100 3E22 3 E Stathmin-4 RB3 stathmin-like domain 4 10116
101 1SA1 3 E Stathmin 4 10116
102 1Z2B 3 E RB3 STATHMIN-LIKE DOMAIN 4 10116
103 3DU7 3 E Stathmin-4 RB3 stathmin-like domain 4 10116
104 3N2K 3 E Stathmin-4 UNP residues 49-189 10116