Sequence Similarity Clusters for the Entities in PDB 4O2B

Entity #1 | Chains: A,C
Tubulin alpha-1B chain protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 168 43
95 % 43 262 13 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 43 265 15
70 % 43 281 13
50 % 43 281 18
40 % 85 562 3
30 % 85 573 8
Entity #2 | Chains: B,D
Tubulin beta-2B chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 108 178
95 % 42 260 14 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.7
PDBFlex
90 % 43 273 8
70 % 43 281 12
50 % 43 281 17
40 % 86 562 3
30 % 86 573 8
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 104 414
95 % 33 118 454 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.9
PDBFlex
90 % 33 118 485
70 % 33 118 518
50 % 33 118 542
40 % 33 118 585
30 % 33 118 600
Entity #4 | Chains: F
Tubulin-tyrosine ligase protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 104 415
95 % 32 104 541 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 0.8
PDBFlex
90 % 32 104 570
70 % 32 107 574
50 % 32 107 611
40 % 32 107 649
30 % 32 107 665

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6S8K 2 B Tubulin beta-2B chain 9913
2 5IYZ 2 B, D Tubulin beta-2B chain 9913
3 4I4T 2 B, D Tubulin beta-2B chain 9913
4 5NQU 2 B Tubulin beta-2B chain 9913
5 5LXT 2 B, D Tubulin beta-2B chain 9913
6 5EYP 2 B Tubulin beta chain 9940
7 6QTN 2 B, D Tubulin beta-2B chain 9913
8 6S8L 2 B Tubulin beta-3 chain 9606
9 4IHJ 2 B, D Tubulin beta-2B chain 9913
10 4TV9 2 B, D Tubulin beta-2B chain 9913
11 5M7E 2 B, D Tubulin beta-2B chain 9913
12 3RYC 2 B, D Tubulin beta chain 9940
13 5EZY 2 B, D Tubulin beta-2B chain 9913
14 4LNU 2 B Tubulin beta chain 9940
15 5EIB 2 D Tubulin beta-2B chain 9913
16 6FKL 2 B, D Tubulin beta-2B chain 9913
17 6FJM 2 B, D Tubulin beta-2B chain 9913
18 5M8G 2 B, D Tubulin beta-2B chain 9913
19 5NM5 2 B Tubulin beta-2B chain 9913
20 5NFZ 2 B, D Tubulin beta-2B chain 9913
21 4TUY 2 B, D Tubulin beta-2B chain 9913
22 4DRX 2 B, D Tubulin beta chain UNP residues 1-431 9940
23 6FKJ 2 B, D Tubulin beta-2B chain 9913
24 5LA6 2 B, D Tubulin beta-2B chain 9913
25 6F7C 2 B, D Tubulin beta-2B chain 9913
26 4I55 2 B, D Tubulin beta-2B chain 9913
27 4TV8 2 B, D Tubulin beta-2B chain 9913
28 5NQT 2 B Tubulin beta-2B chain 9913
29 4O4H 2 B, D Tubulin beta-2B chain 9913
30 5NG1 2 B, D Tubulin beta-2B chain 9913
31 5OSK 2 B, D Tubulin beta-2B chain 9913
32 5ITZ 2 B Tubulin beta-2B chain 9913
33 5M8D 2 B, D Tubulin beta-2B chain 9913
34 5M7G 2 B, D Tubulin beta-2B chain 9913
35 5YL2 2 B, D Tubulin beta chain 9823
36 4O4L 2 B, D Tubulin beta-2B chain 9913
37 5LXS 2 B, D Tubulin beta-2B chain 9913
38 5JQG 2 B, D Tubulin beta chain 9823
39 5JH7 2 B, D Tubulin beta-2B chain 9913
40 5J2T 2 B, D Tubulin beta-2B chain 9913
41 5XKG 2 B, D Tubulin beta chain 9823
42 5JCB 2 B, D Tubulin beta chain 9823
43 4O2B 2 B, D Tubulin beta-2B chain 9913
44 4O4J 2 B, D Tubulin beta-2B chain 9913
45 5MF4 2 B, D Tubulin beta-2B chain 9913
46 3RYI 2 B, D Tubulin beta chain 9940
47 5CB4 2 B, D Tubulin beta 41807
48 5JVD 2 B, D Tubulin beta-2B chain 9913
49 5XKH 2 B, D Tubulin beta chain 9823
50 6FII 2 B, D Tubulin beta-2B chain 9913
51 6O5M 2 B, D Tubulin beta-2B chain 9823
52 5XP3 2 B, D Tubulin beta chain 9823
53 4I50 2 B, D Tubulin beta-2B chain 9913
54 6S9E 2 B, D Tubulin beta-2B chain 9913
55 6BR1 2 B, D Tubulin beta-2B chain 9823
56 6QQN 2 B, D Tubulin beta-2B chain 9913
57 3RYF 2 B, D Tubulin beta chain 9940
58 4O4I 2 B, D Tubulin beta-2B chain 9913
59 5LOV 2 B, D Tubulin beta-2B chain 9913
60 5LYJ 2 B, D Tubulin beta-2B chain 9913
61 5OV7 2 B, D Tubulin beta-2B chain 9913
62 6NNG 2 B, D Tubulin beta-2B chain 9823
63 5CA1 2 B, D Tubulin beta-2 chain 9031
64 4ZOL 2 B, D Tubulin beta chain 9823
65 5XLZ 2 B, D Tubulin beta-2B chain 9913
66 6HX8 2 B, D Tubulin beta-2B chain 9913
67 6GJ4 2 B, D Tubulin beta-2B chain 9913
68 6GF3 2 B Tubulin beta-2B chain 9913
69 6GF3 3 D Tubulin beta-2B chain 9913
70 4ZI7 2 B, D Tubulin beta chain 9823
71 6FJF 2 B, D Tubulin beta-2B chain 9913
72 5BMV 2 B, D Tubulin beta chain 9823
73 6BRF 2 B, D Tubulin beta-2B chain 9823
74 6EG5 2 B, D Tubulin beta-2B chain 9913
75 6GWC 2 B Tubulin beta chain 9940
76 4O2A 2 B, D Tubulin beta-2B chain 9913
77 4F6R 2 B Tubulin beta chain 9940
78 5KX5 2 B, D Tubulin beta chain 9940
79 4ZHQ 2 B, D Tubulin beta chain 9823
80 5CA0 2 B, D Uncharacterized protein 9823
81 5NJH 2 B, D Tubulin beta-2B chain 9913
82 5O7A 2 B, D Tubulin beta-2B chain 9913
83 5FNV 2 B, D TUBULIN BETA CHAIN 10116
84 5GON 2 B, D Tubulin beta-2B chain UNP RESIDUES 1-431 9913
85 6BS2 2 B, D Tubulin beta-2B chain 9823
86 4YJ2 2 B, D Tubulin beta-2B chain 9913
87 6H9B 2 B, D Tubulin beta chain 9940
88 3RYH 2 B, D Tubulin beta chain 9940
89 6GZE 2 B, D Tubulin beta-2B chain 9913
90 4IIJ 2 B, D Tubulin beta-2B chain 9913
91 5XAF 2 B, D Tubulin beta-2B chain 9913
92 5J2U 2 B, D Tubulin beta-2B chain 9913
93 6KNZ 2 B, D Tubulin beta-2B chain 9913
94 5YZ3 2 B, D Tubulin beta-2B chain 9913
95 5H74 2 B, D Tubulin beta-2B chain 9913
96 6N47 2 B, D Tubulin beta-2B chain 9913
97 3UT5 2 B, D Tubulin beta chain 9940
98 6O61 2 B, D Tubulin beta-2B chain 9823
99 5XAG 2 B, D Tubulin beta-2B chain 9913
100 6GVN 2 B Tubulin beta chain 9940
101 5Z4P 2 B, D Tubulin beta-2B chain UNP residues 1-425 9913
102 6BRY 2 B, D Tubulin beta-2B chain 9823
103 6K9V 2 B, D Tubulin beta-2B chain 9913
104 6I5C 2 B, D Tubulin beta-2B chain 9913
105 5XKE 2 B, D Tubulin beta chain 9823
106 5C8Y 2 B, D Tubulin beta 41807
107 5YL4 2 B, D Tubulin beta chain 41807
108 6JCJ 2 B, D Tubulin beta-2B chain 9913
109 6D88 2 B, D Tubulin beta chain 9823
110 5YLJ 2 B, D Tubulin beta chain 9823
111 5XLT 2 B, D Tubulin beta-2B chain 9913
112 5ZXH 2 B, D Tubulin beta-2B chain 9913
113 5XKF 2 B, D Tubulin beta chain 9823
114 6AGK 2 B, D Tubulin beta-2B chain 9913
115 5H7O 2 B, D Tubulin beta-2B chain 9913
116 5XIW 2 B, D Tubulin beta chain 9823
117 6GX7 2 B, D Tubulin beta chain 9940
118 4HNA 2 B Tubulin beta chain 9940
119 5XHC 2 B, D Tubulin beta chain 41807
120 6MZG 2 B, D, H, J Tubulin beta chain 9823
121 6O5N 2 B, D Tubulin beta-2B chain 9823
122 4X1I 2 B, D Tubulin beta chain 9940
123 5XI5 2 B, D Tubulin beta chain 41807
124 5Z4U 2 B, D Tubulin beta-2B chain 9913
125 5YLS 2 B, D Tubulin beta chain 9823
126 4X1Y 2 B, D Tubulin beta chain 9940
127 5XI7 2 B, D Tubulin beta chain 41807
128 4X20 2 B, D Tubulin beta chain 9940
129 5MIO 2 B Tubulin beta chain 9940
130 4X1K 2 B, D Tubulin beta chain 9940
131 6GWD 2 B, D, F Tubulin beta chain 9940
132 4EB6 2 B, D Tubulin beta chain 9940
133 6MZE 2 B, D, I, K, P, R, W, Y Tubulin beta chain 9823
134 5LP6 2 B, D Tubulin beta-2B chain 9913
135 3HKE 2 B, D Tubulin beta chain 9940
136 3HKB 2 B, D Tubulin beta chain 9940
137 3HKD 2 B, D Tubulin beta chain 9940
138 3HKC 2 B, D Tubulin beta chain 9940
139 1SA0 2 B, D Tubulin beta chain 9913
140 6BBN 2 B, D Tubulin beta-2B chain 9913
141 3N2G 2 B, D Tubulin beta chain 9940
142 6GVM 2 B Tubulin beta chain 9940
143 3E22 2 B, D Tubulin beta-2B chain 9913
144 1SA1 2 B, D Tubulin beta chain 9913
145 1Z2B 2 B, D Tubulin beta chain 9913
146 3DU7 2 B, D Tubulin beta-2B chain 9913
147 3N2K 2 B, D Tubulin beta chain 9940
148 4YJ3 2 B, D Tubulin beta-2B chain 9913
149 4F61 2 B, D, F, H Tubulin beta chain 9940
150 6MZF 2 B, D, I, K, P, R, W, Y Tubulin beta chain 9823
151 1FFX 2 B, D PROTEIN (TUBULIN) 9913
152 6VPO 2 B Tubulin beta chain 9823
153 6VPP 2 B Tubulin beta chain 9823
154 6VE7 5 4, 8, 9, I, J, K, N, O, Q, R, T, U, V, a, b, i, j, p, q, r, t, u, v, w Tubulin beta 3055
155 6TIW 2 B Tubulin beta chain 9823
156 6TA4 1 B Tubulin beta chain 9823
157 6U42 1 0A, 0C, 0E, 0G, 0I, 0K, 0M, 0O, 0Q, 0S, 0U, 0W, 0Y, 1, 1A, 1C, 1E, 1G, 1K, 1M, 1O, 1Q, 1S, 1U, 1W, 2A, 2C, 2E, 2G, 2I, 2K, 2M, 2Q, 2S, 2U, 2W, 2Y, 3, 3A, 3C, 3G, 3I, 3K, 3M, 3O, 3Q, 3S, 5, 7, 9, A1, A3, A5, A7, A9, B1, B3, B5, B8, C0, C2, C4, C6, C8, D0, D2, D4, D6, D8, E0, E2, E4, E6, E8, F0, F2, F6, F8, G0, G2, G4, G6, G8, H2, H4, H6, H8, I0, I2, I4, I8, J0, J2, J4, J6, J8, K0, K4, K6, K8, L0, L2, L4, L6, M0, M2, M4, M6, M8, N0, N2, N6, N8, O0, O2, O4, O6, O8, P4, P6, P8, Q0, Q2, Q4, Q6, Q8, R0, R2, R4, R6, R8, S0, S2, S4, S6, S8, T0, T2, T4, T6, T8, U2, U4, U6, U8, V0, V2, V4, V6, V8, W0, W2, W4, W6, W8, X0, X2, X4, X6, X8, Y0, Y2, Y4, Y6, Y8, Z0, Z2, Z4, Z6, Z8 Tubulin beta 3055
158 6U0H 2 B Tubulin beta chain 5911 1.1.1.381 | Details
159 6U0T 2 B, I, J, K, L, M Tubulin beta chain 5911 1.1.1.381 | Details
160 6U0U 2 B, I, J, K, L, M Tubulin beta chain 5911 1.1.1.381 | Details
161 6KIO 1 b Tubulin beta chain 9823
162 6KIQ 2 b Tubulin beta chain 9823
163 6RZA 3 B, D Tubulin beta chain 9823
164 6RZB 2 B Tubulin beta chain 9823
165 6QVJ 3 S, U Tubulin beta chain GDP Taxol 9606
166 6QVE 3 G, H Beta1-tubulin GDP Taxol 9606
167 6QUS 3 S, U Tubulin beta chain GDP Taxol 9606
168 6QUY 3 G, H Tubulin beta chain GDP Taxol 9606
169 6O2Q 2 B, D, F, G, H, I Tubulin beta chain 9823
170 6O2R 2 B, D, F, G, H, I Tubulin beta chain 9823
171 6O2S 2 1H, 1O, 1P, 1Q, 1R, 1S, 1T, 1U, 1V, 1W, 1X, 1Y, 1Z, 2H, 2O, 2P, 2Q, 2R, 2S, 2T, 2U, 2V, 2W, 2X, 2Y, 2Z, 3H, 3O, 3P, 3Q, 3R, 3S, 3T, 3U, 3V, 3W, 3X, 3Y, 3Z, 4H, 4O, 4P, 4Q, 4R, 4S, 4T, 4U, 4V, 4W, 4X, 4Y, 4Z Tubulin beta chain 9823
172 6O2T 2 1H, 1O, 1P, 1Q, 1R, 1S, 1T, 1U, 1V, 1W, 1X, 1Y, 1Z, 2H, 2O, 2P, 2Q, 2R, 2S, 2T, 2U, 2V, 2W, 2X, 2Y, 2Z, 3H, 3O, 3P, 3Q, 3R, 3S, 3T, 3U, 3V, 3W, 3X, 3Y, 3Z, 4H, 4O, 4P, 4Q, 4R, 4S, 4T, 4U, 4V, 4W, 4X, 4Y, 4Z Tubulin beta chain 9823
173 6I2I 2 B Tubulin beta chain Beta1-tubulin 9606
174 6MLQ 2 B Tubulin beta chain 9823
175 6MLR 2 B Tubulin beta chain 9823
176 6E88 2 B, D, J, K, N, O Tubulin beta-2 chain 6239
177 6E7B 1 B Tubulin beta-3 chain 9606
178 6E7C 1 B Tubulin beta-2B chain 9606
179 6DPU 2 B, D, F, G, H, I Tubulin beta chain 9823
180 6DPV 2 B, D, F, G, H, I Tubulin beta chain 9823
181 6DPW 2 B, D, F, G, H, I Tubulin beta chain 9823
182 6CVJ 2 B, C Tubulin beta chain 9823
183 6CVN 1 A, C Tubulin beta chain 9823
184 6BJC 2 B, D, F, G, H, I Tubulin beta chain 9823
185 6EVX 1 B, D, F, G, H, I Tubulin beta chain 9823
186 6EVY 2 B, D, F, G, H, I Tubulin beta chain 9823
187 6EVZ 1 B, D, F, G, H, I Tubulin beta chain 9823
188 6EW0 2 B, D, F, G, H, I Tubulin beta chain 9823
189 6EVW 2 B, D, F, G, H, I Tubulin beta chain 9823
190 6B0C 2 B, D Tubulin beta chain 9823
191 6B0I 3 B Tubulin beta chain 9823
192 6B0L 2 B Tubulin beta chain 9823
193 5OGC 3 B Tubulin beta chain 9823
194 5XXT 2 B, D, F, H, J, L, N, P, R Tubulin beta chain UNP residues 2-427 9823
195 5XXV 2 B, D, F, H, J, L, N, P, R Tubulin beta chain UNP residues 2-427 9823
196 5XXW 2 B, D, F, H, J, L, N, P, R Tubulin beta chain UNP residues 2-427 9823
197 5XXX 2 B, D, F, H, J, L, N, P, R Tubulin beta chain UNP residues 2-427 9823
198 5OCU 3 B Tubulin beta chain 9823
199 5OAM 3 B Tubulin beta chain 9823
200 5ND2 3 B Tubulin beta-2B chain 9913
201 5ND3 3 B Tubulin beta-2B chain 9913
202 5ND4 3 B Tubulin beta-2B chain 9913
203 5ND7 3 B Tubulin beta-2B chain 9913
204 5N5N 1 A, B, C, D, E, F Tubulin beta chain GMPCPP (GTP-analogue) bound 9606
205 5UCY 2 B Tubulin beta chain 5911 1.1.1.381 | Details
206 5UBQ 2 B, D, F Tubulin beta chain 5911 1.1.1.381 | Details
207 5MM4 3 B Tubulin beta chain 9823
208 5MM7 3 B Tubulin beta chain 9823
209 5M5N 2 B Tubulin beta-2B chain 9913
210 5M5O 2 B Tubulin beta-2B chain 9913
211 5M5C 3 B, E Tubulin beta-2B chain 9913
212 5M5I 2 B Tubulin beta-2B chain 9913
213 5M5L 2 B Tubulin beta-2B chain 9913
214 5M5M 2 B Tubulin beta-2B chain 9913
215 5M50 2 B, E Tubulin beta-2B chain 9913
216 5M54 3 B, E Tubulin beta-2B chain 9913
217 5SYF 2 B Tubulin beta chain 9823
218 5SYG 2 B Tubulin beta chain 9823
219 5SYC 2 B Tubulin beta chain 9823
220 5SYE 2 B Tubulin beta chain 9823
221 5KMG 2 B Tubulin beta chain 9823
222 5JCO 1 C, D, I, J, K, L Tubulin beta-3 chain 9606
223 5IJ0 2 B Tubulin beta-3 chain 9606
224 5IJ9 2 B Tubulin beta-3 chain 9606
225 5HNW 2 B Tubulin beta-2B chain 9913
226 5HNX 2 B Tubulin beta-2B chain 9913
227 5HNY 2 B Tubulin beta-2B chain UNP residues 2-427 9913
228 5HNZ 2 B Tubulin beta-2B chain 9913
229 3JAW 2 B, D Tubulin beta chain 9823
230 3JAT 2 B, D, F, G, H, I Tubulin beta chain 9823
231 3JAR 2 B, D, F, G, H, I Tubulin beta chain 9823
232 3JAS 2 B, D, F, G, H, I Tubulin beta chain 9823
233 3JAO 2 B Tubulin beta chain SEE REMARK 999 5911
234 3JAK 2 B, D, F, G, H, I Tubulin beta chain 9823
235 3JAL 2 B, D, F, G, H, I Tubulin beta chain 9823
236 3J8X 3 B Tubulin beta-2B chain 9823
237 3J8Y 3 B Tubulin beta-2B chain 9823
238 4UXO 2 B TUBULIN BETA-2B CHAIN 9913
239 4UXP 2 B TUBULIN BETA-2B CHAIN 9913
240 4UXR 2 B TUBULIN BETA-2B CHAIN 9913
241 4UXS 2 B TUBULIN BETA-2B CHAIN 9913
242 4UXT 2 B TUBULIN BETA-2B CHAIN 9913
243 4UXY 2 B BETA TUBULIN 9913
244 4UY0 2 B TUBULIN BETA-2B CHAIN RESIDUES 2-427 9913
245 3J7I 2 B Tubulin beta chain 9823
246 3J6P 3 B Tubulin beta chain 9823
247 3J6H 2 B Tubulin beta chain UNP residues 2-427 9823
248 3J6F 2 B, D, F, H, J, L, N, P, R Tubulin beta chain 9823
249 3J6G 2 B, D, F, H, J, L, N, P, R Tubulin beta chain 9823
250 3J6E 2 B, D, F, H, J, L, N, P, R Tubulin beta chain 9823
251 4CK5 2 B TUBULIN BETA-2B CHAIN 9913
252 4CK6 2 B TUBULIN BETA-2B CHAIN 9913
253 4CK7 2 B TUBULIN BETA-2B CHAIN 9913
254 3J2U 3 B, D Tubulin beta-2B chain 9913
255 3J1T 3 C Tubulin beta-2B chain 9913
256 3J1U 3 C Tubulin beta-2B chain 9913
257 4ATX 1 A TUBULIN BETA-2B CHAIN 9913 3.6.5.6 | Details
258 4ATU 1 A, C, E, G TUBULIN BETA-2B CHAIN 9913 3.6.5.6 | Details
259 4AQV 2 B TUBULIN BETA-2B CHAIN 9913
260 4AQW 2 B TUBULIN BETA-2B CHAIN 9913
261 4ABO 1 A, C, E, G TUBULIN BETA CHAIN 9823 3.6.5.6 | Details
262 2XRP 1 A, C, E, G TUBULIN BETA-2B CHAIN 9913 3.6.5.6 | Details
263 3IZ0 2 B beta tubulin, Chain B from PDB 1JFF 9913
264 2WBE 2 B TUBULIN BETA-2B CHAIN 9913
265 3EDL 2 B, G Beta tubulin 9913
266 3DCO 3 B Bovine Beta Tubulin Beta Tubulin Subunit 9913
267 2P4N 3 B Tubulin beta chain 9913
268 2HXF 2 B Tubulin beta chain 9823
269 2HXH 2 B Tubulin beta chain 9823
270 1TVK 2 B Tubulin beta chain see REMARK 400 9913
271 1JFF 2 B tubulin beta chain 9913
272 1IA0 2 B TUBULIN BETA CHAIN 9823
273 1TUB 2 B TUBULIN 9823