Sequence Similarity Clusters for the Entities in PDB 4NY8

Entity #1 | Chains: A
DNA polymerase beta protein, length: 326 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 148 306 101
95 % 187 368 84 Flexibility: Low
Max RMSD: 14.0, Avg RMSD: 2.9
PDBFlex
90 % 187 368 90
70 % 187 368 102
50 % 187 368 131
40 % 187 368 149
30 % 284 491 100
Entity #2 | Chains: T
5'-D(*CP*CP*GP*AP*CP*(6OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: P
5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
5'-D(P*GP*TP*CP*GP*G)-3' dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures