Sequence Similarity Clusters for the Entities in PDB 4NJ9

Entity #1 | Chains: L
8B10 light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 83356
95 % 8 40 968 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 18 120 155
70 % 575 2418 2
50 % 729 3071 2
40 % 729 3071 2
30 % 1503 6236 1
Entity #2 | Chains: H
8B10 heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 83355
95 % 1 1 55616
90 % 1 2 37655
70 % 714 2969 1
50 % 762 3121 1
40 % 762 3121 1
30 % 1504 6236 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4NJ9 2 H 8B10 heavy chain 10090
2 4NJA 2 H 6C8 heavy chain 10090