Sequence Similarity Clusters for the Entities in PDB 4NJ9

Entity #1 | Chains: L
8B10 light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 82961
95 % 8 40 947 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 18 120 153
70 % 565 2391 2
50 % 719 3030 2
40 % 719 3030 2
30 % 1483 6153 1
Entity #2 | Chains: H
8B10 heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 82960
95 % 1 1 55273
90 % 1 2 37408
70 % 704 2928 1
50 % 752 3079 1
40 % 752 3079 1
30 % 1484 6153 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures