Sequence Similarity Clusters for the Entities in PDB 4NCO

Entity #1 | Chains: A,E,I
BG505 SOSIP gp120 protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 750
95 % 32 57 401 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.3
PDBFlex
90 % 32 57 425
70 % 44 79 332
50 % 45 79 399
40 % 45 79 420
30 % 45 79 434
Entity #2 | Chains: B,F,J
BG505 SOSIP gp41 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C,G,K
PGT122 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 18 1990
95 % 15 18 2572 Flexibility: Medium
Max RMSD: 8.9, Avg RMSD: 3.4
PDBFlex
90 % 18 21 2350
70 % 552 579 7
50 % 2728 2875 2
40 % 2728 2875 2
30 % 5526 5831 1
Entity #4 | Chains: D,H,L
PGT122 heavy chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 16 2806
95 % 15 18 2542 Flexibility: Medium
Max RMSD: 8.5, Avg RMSD: 3.7
PDBFlex
90 % 15 18 2581
70 % 2642 2773 1
50 % 2763 2914 1
40 % 2763 2914 1
30 % 5527 5831 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures