Sequence Similarity Clusters for the Entities in PDB 4N0U

Entity #1 | Chains: A
IgG receptor FcRn large subunit p51 protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 13 1779
95 % 5 6 5541 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 5 6 5591
70 % 5 6 5530
50 % 7 9 3932
40 % 7 9 3883
30 % 901 906 12
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 708 716 2
95 % 756 765 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 774 783 3
70 % 1076 1086 4
50 % 1100 1110 4
40 % 1100 1110 5
30 % 1100 1110 8
Entity #3 | Chains: D
Serum albumin protein, length: 583 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 94 96 227
95 % 104 106 278 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.7
PDBFlex
90 % 104 106 295
70 % 145 147 253
50 % 145 147 283
40 % 145 147 296
30 % 148 150 303
Entity #4 | Chains: E
Ig gamma-1 chain C region protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 30402
95 % 174 182 118 Flexibility: Low
Max RMSD: 10.4, Avg RMSD: 1.5
PDBFlex
90 % 109 109 261
70 % 190 199 123
50 % 201 210 131
40 % 201 210 149
30 % 219 229 135

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures