Sequence Similarity Clusters for the Entities in PDB 4MNQ

Entity #1 | Chains: A
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 185 222 54
95 % 234 277 64 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 287 339 37
70 % 687 817 6
50 % 696 831 8
40 % 737 876 9
30 % 744 900 12
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 598 710 2
95 % 638 758 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 654 777 4
70 % 876 1080 4
50 % 892 1104 4
40 % 892 1104 5
30 % 892 1104 8
Entity #3 | Chains: C
Telomerase reverse transcriptase protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
Uncharacterized protein, T-cell receptor, sp3.4 alpha chain protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65972
95 % 5 7 11810 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.7
PDBFlex
90 % 8 12 4217
70 % 132 185 167
50 % 256 396 77
40 % 256 396 91
30 % 256 396 91
Entity #5 | Chains: E
V_segment translation product, T-cell receptor beta-1 chain C region protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65971
95 % 22 30 2041 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.3
PDBFlex
90 % 59 81 412
70 % 249 379 43
50 % 261 405 64
40 % 261 405 81
30 % 261 405 86

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures