Sequence Similarity Clusters for the Entities in PDB 4MJI

Entity #1 | Chains: A,F
HLA class I histocompatibility antigen, B-51 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 35833
95 % 118 122 297 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 226 231 148
70 % 787 816 6
50 % 789 821 8
40 % 832 865 9
30 % 850 889 12
Entity #2 | Chains: B,G
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 665 702 2
95 % 713 751 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 729 767 3
70 % 1018 1070 4
50 % 1038 1094 4
40 % 1038 1094 4
30 % 1038 1094 7
Entity #3 | Chains: C,H
HIV Reverse Transcriptase peptide Marker protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,I
T-Cell Receptor Chain alpha protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57422
95 % 1 1 42866 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 4 6 9740
70 % 74 85 488
50 % 351 394 76
40 % 351 394 89
30 % 351 394 90
Entity #5 | Chains: E,J
T-cell Receptor Beta chain protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44213
95 % 5 5 14698 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 9 10 4960
70 % 342 381 43
50 % 358 403 64
40 % 358 403 80
30 % 358 403 85

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures