Sequence Similarity Clusters for the Entities in PDB 4MDQ

Entity #1 | Chains: A
E3 ubiquitin-protein ligase Mdm2 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 48 326
95 % 42 62 306 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.1
PDBFlex
90 % 53 77 274
70 % 49 71 346
50 % 49 71 409
40 % 49 71 431
30 % 49 71 444

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5C5A 1 A, B E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
2 6Q9L 1 A, B E3 ubiquitin-protein ligase Mdm2 N-terminal domain, p53 binding domain 9606 2.3.2.27 | Details
3 6Q9O 1 A, B E3 ubiquitin-protein ligase Mdm2 N-terminal domain, p53 binding domain 9606 2.3.2.27 | Details
4 5ZXF 1 A E3 ubiquitin-protein ligase Mdm2 UNP residues 24-110 9606 2.3.2.27 | Details
5 4OGN 1 A E3 ubiquitin-protein ligase Mdm2 UNP Residues 6-110 9606 2.3.2.27 | Details
6 4WT2 1 A E3 ubiquitin-protein ligase Mdm2 UNP RESIDUES 12-116 9606 2.3.2.27 | Details
7 3EQS 1 A E3 ubiquitin-protein ligase Mdm2 UNP residues 25-109 9606 2.3.2.27 | Details
8 4HG7 1 A E3 ubiquitin-protein ligase Mdm2 p53 binding domain (residues 17-125) 9606 2.3.2.27 | Details
9 4OGT 1 A E3 ubiquitin-protein ligase Mdm2 UNP Residue 6-110 9606 2.3.2.27 | Details
10 5UMM 1 A, C E3 ubiquitin-protein ligase Mdm2 residues 25-109 9606 2.3.2.27 | Details
11 3IUX 1 A, C E3 ubiquitin-protein ligase Mdm2 UNP residues 25-109, p53 binding domain, SWIB domain 9606 2.3.2.27 | Details
12 5LAZ 1 A E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
13 3TU1 1 A E3 ubiquitin-protein ligase Mdm2 p53 binding domain (UNP Residues 18-105) 9606 2.3.2.27 | Details
14 5LN2 1 A E3 ubiquitin-protein ligase Mdm2 N-terminal domain, p53 binding domain 9606 2.3.2.27 | Details
15 5LAW 1 A E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
16 5XXK 1 A, B E3 ubiquitin-protein ligase Mdm2 UNP residues 6-125 9606 2.3.2.27 | Details
17 5OC8 1 A E3 ubiquitin-protein ligase Mdm2 N-terminal domain, p53 binding domain 9606 2.3.2.27 | Details
18 4OAS 1 A, C, E E3 ubiquitin-protein ligase Mdm2 UNP Residues 17-111 9606 2.3.2.27 | Details
19 6I3S 1 A E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
20 5HMI 1 A, B E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
21 4ZYI 1 A E3 ubiquitin-protein ligase Mdm2 N-TERMINAL DOMAIN, P53-BINDING DOMAIN, UNP residues 17-111 9606 2.3.2.27 | Details
22 4ODE 1 A E3 ubiquitin-protein ligase Mdm2 UNP Residues 6-110 9606 2.3.2.27 | Details
23 3TPX 1 A, C, E E3 ubiquitin-protein ligase Mdm2 p53 binding domain (UNP residues 25-109) 9606 2.3.2.27 | Details
24 5VK0 1 A, C, E, G, I, K, M, O, Q, S, U, W E3 ubiquitin-protein ligase Mdm2 residues 25-109 9606 2.3.2.27 | Details
25 6Q96 1 A, B E3 ubiquitin-protein ligase Mdm2 N-terminal domain, p53 binding domain 9606 2.3.2.27 | Details
26 4QOC 1 A, C, E, G, I, K E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
27 4OCC 1 A, C, E E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
28 5AFG 1 A E3 UBIQUITIN-PROTEIN LIGASE MDM2 P53 BINDING DOMAIN (RESIDUES 17-108) 9606 2.3.2.27 | Details
29 3JZS 1 A E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
30 5HMH 1 A, B E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
31 4OBA 1 A, B, C E3 ubiquitin-protein ligase Mdm2 UNP Residues 17-111 9606 2.3.2.27 | Details
32 5LAV 1 A E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
33 4JVR 1 A, C, E E3 ubiquitin-protein ligase Mdm2 UNP residues 18-111 9606 2.3.2.27 | Details
34 3V3B 1 A, B E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
35 4DIJ 1 A, B E3 ubiquitin-protein ligase Mdm2 N-TERMINAL DOMAIN, P53-BINDING DOMAIN, UNP RESIDUES 17-111 9606 2.3.2.27 | Details
36 4ZYF 1 A E3 ubiquitin-protein ligase Mdm2 N-TERMINAL DOMAIN, P53-BINDING DOMAIN, UNP residues 17-111 9606 2.3.2.27 | Details
37 4QO4 1 A E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
38 3W69 1 A, B E3 ubiquitin-protein ligase Mdm2 UNP residues 25-109 9606 2.3.2.27 | Details
39 5J7F 1 A, B, C, D E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
40 6AAW 1 A E3 ubiquitin-protein ligase Mdm2 UNP residues 6-125 9606 2.3.2.27 | Details
41 4HBM 1 A, B, C, D, E, F, G, H E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
42 4ERE 1 A, B E3 ubiquitin-protein ligase Mdm2 unp residues 17-111 9606 2.3.2.27 | Details
43 3IWY 2 A, C E3 ubiquitin-protein ligase Mdm2 UNP residues 25-109, SWIB domain 9606 2.3.2.27 | Details
44 4UMN 1 A, B E3 UBIQUITIN-PROTEIN LIGASE MDM2 P53 BINDING DOMAIN, RESIDUES 6-125 9606 2.3.2.27 | Details
45 3LNZ 1 A, C, E, G, I, K, M, O E3 ubiquitin-protein ligase Mdm2 UNP residues 25-109, P53 BINDING DOMAIN 9606 2.3.2.27 | Details
46 4ZYC 1 A, B, C E3 ubiquitin-protein ligase Mdm2 N-TERMINAL DOMAIN, P53-BINDING DOMAIN, UNP residues 17-111 9606 2.3.2.27 | Details
47 5TRF 1 A, B, C, D, E E3 ubiquitin-protein ligase Mdm2 residues 10-118 9606 2.3.2.27 | Details
48 6H22 1 A, B E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
49 4MDQ 1 A E3 ubiquitin-protein ligase Mdm2 UNP residues 25-110 9606 2.3.2.27 | Details
50 6GGN 1 A E3 ubiquitin-protein ligase Mdm2 N-terminal domain, p53 binding domain 9606 2.3.2.27 | Details
51 4ERF 1 A, C, E E3 ubiquitin-protein ligase Mdm2 unp residues 17-111 9606 2.3.2.27 | Details
52 6Q9H 1 A E3 ubiquitin-protein ligase Mdm2 N-terminal domain, p53 binding domain 9606 2.3.2.27 | Details
53 4OQ3 1 A, B, C, D E3 ubiquitin-protein ligase Mdm2 N-TERMINAL DOMAIN, UNP residues 17-111 9606 2.3.2.27 | Details
54 5HMK 1 A, B E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
55 3LBK 1 A E3 ubiquitin-protein ligase Mdm2 p53 binding domain 9606 2.3.2.27 | Details
56 4JV7 1 A E3 ubiquitin-protein ligase Mdm2 UNP residues 18-111 9606 2.3.2.27 | Details
57 3LNJ 1 A, C, E E3 ubiquitin-protein ligase Mdm2 UNP residues 25-109, P53 BINDING DOMAIN 9606 2.3.2.27 | Details
58 4ODF 1 A E3 ubiquitin-protein ligase Mdm2 UNP Residues 6-110 9606 2.3.2.27 | Details
59 3JZK 1 A E3 ubiquitin-protein ligase Mdm2 MDM2 N-terminal domain, residues 17-111 9606 2.3.2.27 | Details
60 3VBG 1 A, B, C, D E3 ubiquitin-protein ligase Mdm2 unp residues 25-109 9606 2.3.2.27 | Details
61 1RV1 1 A, B, C Ubiquitin-protein ligase E3 Mdm2 RESIDUES 25-109 9606 2.3.2.27 | Details
62 4JVE 1 A E3 ubiquitin-protein ligase Mdm2 UNP residues 18-111 9606 2.3.2.27 | Details
63 4JV9 1 A E3 ubiquitin-protein ligase Mdm2 UNP residues 18-111 9606 2.3.2.27 | Details
64 1T4E 1 A, B Ubiquitin-protein ligase E3 Mdm2 p53-binding domain 9606 2.3.2.27 | Details
65 5WTS 2 B E3 ubiquitin-protein ligase Mdm2 UNP residues 6-125 9606 2.3.2.27 | Details
66 6IM9 2 B E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
67 3VZV 1 A, B E3 ubiquitin-protein ligase Mdm2 SWIB domain, UNP residues 25-109 9606 2.3.2.27 | Details
68 2MPS 1 A E3 ubiquitin-protein ligase Mdm2 UNP residues 3-109 9606 2.3.2.27 | Details
69 2M86 2 B E3 ubiquitin-protein ligase Mdm2 UNP residues 17-125 9606 2.3.2.27 | Details
70 2LZG 1 A E3 ubiquitin-protein ligase Mdm2 9606 2.3.2.27 | Details
71 1Z1M 1 A Ubiquitin-protein ligase E3 Mdm2 N-terminal domain 9606 2.3.2.27 | Details