Sequence Similarity Clusters for the Entities in PDB 4M8O

Entity #1 | Chains: A
DNA polymerase epsilon catalytic subunit A protein, length: 1228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30182
95 % 1 7 9727 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 1 7 9635
70 % 1 7 8861
50 % 1 7 8230
40 % 1 7 7927
30 % 1 7 7411
Entity #2 | Chains: P
PRIMER DNA dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: T
TEMPLATE DNA dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures