Sequence Similarity Clusters for the Entities in PDB 4M7D

Entity #1 | Chains: A,H
U6 snRNA-associated Sm-like protein LSm8 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14815
95 % 1 3 15406 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 3 15147
70 % 1 3 14214
50 % 1 3 12904
40 % 1 3 12059
30 % 1 3 11045
Entity #2 | Chains: B,I
U6 snRNA-associated Sm-like protein LSm2 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 8680
95 % 2 12 4684 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 2 12 4810
70 % 2 12 4706
50 % 2 18 3345
40 % 2 18 3397
30 % 2 18 3281
Entity #3 | Chains: C,J
U6 snRNA-associated Sm-like protein LSm3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 8679
95 % 4 16 2931 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.9
PDBFlex
90 % 4 16 3003
70 % 4 16 3050
50 % 4 16 3070
40 % 4 16 3069
30 % 4 16 3046
Entity #4 | Chains: D,K
U6 snRNA-associated Sm-like protein LSm6 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 14 3416
95 % 3 14 4169 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 3 14 4231
70 % 3 14 4224
50 % 3 14 4124
40 % 3 14 4059
30 % 3 14 3978
Entity #5 | Chains: E,L
U6 snRNA-associated Sm-like protein LSm5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 14 3440
95 % 3 14 4094 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 3 14 4153
70 % 3 14 4139
50 % 3 14 4122
40 % 3 14 4000
30 % 3 14 4010
Entity #6 | Chains: F,M
U6 snRNA-associated Sm-like protein LSm7 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 14 3421
95 % 3 14 4175 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.6
PDBFlex
90 % 3 14 4236
70 % 3 14 4230
50 % 3 14 4129
40 % 3 14 4065
30 % 3 14 3982
Entity #7 | Chains: G,N
U6 snRNA-associated Sm-like protein LSm4 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 8351
95 % 2 6 8610 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 2 6 8550
70 % 2 6 8307
50 % 2 6 7800
40 % 2 6 7503
30 % 4 8 1671
Entity #8 | Chains: O,P
U6 snRNA rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures