Sequence Similarity Clusters for the Entities in PDB 4M5Z

Entity #1 | Chains: A
Hemagglutinin HA1 chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19075
95 % 4 5 6399 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 4 5 6579
70 % 4 5 6325
50 % 9 28 1583
40 % 9 28 1630
30 % 9 29 1620
Entity #2 | Chains: H
Fab 5J8 heavy chain protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33222
95 % 2 2 29643 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.4
PDBFlex
90 % 2 2 28537
70 % 1025 3023 1
50 % 2150 6352 1
40 % 2150 6352 1
30 % 2165 6398 1
Entity #3 | Chains: L
Fab 5J8 light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33223
95 % 2 2 29644 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 35 92 282
70 % 211 650 7
50 % 2151 6352 1
40 % 2151 6352 1
30 % 2166 6398 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures