Sequence Similarity Clusters for the Entities in PDB 4M1D

Entity #1 | Chains: L,M
Fab mAb 447-52D Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 10152
95 % 3 13 2731 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 3.6
PDBFlex
90 % 16 124 165
70 % 55 597 7
50 % 294 2982 2
40 % 294 2982 2
30 % 608 6051 1
Entity #2 | Chains: H,I
Fab mAb 447-52D Heavy Chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 11997
95 % 1 4 11479 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 1 4 11777
70 % 289 2882 1
50 % 309 3027 1
40 % 309 3027 1
30 % 609 6051 1
Entity #3 | Chains: P,Q
Cyclic V3 Arch Peptide protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures