Sequence Similarity Clusters for the Entities in PDB 4LWZ

Entity #1 | Chains: A,C
Ras-related protein Rab-11A protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 3451
95 % 17 20 1443 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.3
PDBFlex
90 % 17 20 1477
70 % 29 42 667
50 % 78 120 208
40 % 129 177 168
30 % 539 663 18
Entity #2 | Chains: B,D
Unconventional myosin-Vb protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27220
95 % 3 4 15531 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 3 4 15298
70 % 11 12 2811
50 % 11 12 2854
40 % 11 12 2856
30 % 11 12 2796

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures