Sequence Similarity Clusters for the Entities in PDB 4LSV

Entity #1 | Chains: G
envelope glycoprotein GP120 protein, length: 358 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 9361
95 % 9 9 4699 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 9 9 4729
70 % 86 101 318
50 % 86 101 377
40 % 86 101 395
30 % 87 102 404
Entity #2 | Chains: H
HEAVY CHAIN OF ANTIBODY 3BNC117 protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 11194
95 % 4 6 6592 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.8
PDBFlex
90 % 4 6 6836
70 % 2347 2784 1
50 % 2462 2927 1
40 % 2462 2927 1
30 % 4926 5855 1
Entity #3 | Chains: L
LIGHT CHAIN OF ANTIBODY 3BNC117 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10789
95 % 4 6 6975 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.3
PDBFlex
90 % 5 7 5752
70 % 1942 2273 2
50 % 2432 2886 2
40 % 2432 2886 2
30 % 4927 5855 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures