Sequence Similarity Clusters for the Entities in PDB 4LSS

Entity #1 | Chains: G
envelope glycoprotein GP120 protein, length: 359 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72319
95 % 1 1 54516
90 % 1 1 51506
70 % 53 101 318
50 % 53 101 377
40 % 53 101 395
30 % 53 102 404
Entity #2 | Chains: H
HEAVY CHAIN OF ANTIBODY VRC01 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17278
95 % 2 4 9276 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.9
PDBFlex
90 % 11 15 3652
70 % 1426 2784 1
50 % 1506 2927 1
40 % 1506 2927 1
30 % 2990 5855 1
Entity #3 | Chains: L
LIGHT CHAIN OF ANTIBODY VRC01 with N72T mutation protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 35065
95 % 12 19 2860 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 2.6
PDBFlex
90 % 14 21 2744
70 % 1164 2273 2
50 % 1466 2886 2
40 % 1466 2886 2
30 % 2991 5855 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures