4LSS

Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 clade A strain KER_2018_11 gp120


Sequence Similarity Clusters for the Entities in PDB 4LSS

Entity #1 | Chains: G
envelope glycoprotein GP120 protein, length: 359 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66589
95 % 1 1 58852
90 % 1 1 49126
70 % 59 233 88
50 % 58 112 385
40 % 58 112 412
30 % 59 114 421
Entity #2 | Chains: H
HEAVY CHAIN OF ANTIBODY VRC01 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 18866
95 % 2 5 7418
90 % 11 16 3596
70 % 1584 3169 1
50 % 3301 6625 1
40 % 3302 6626 1
30 % 3326 6673 1
Entity #3 | Chains: L
LIGHT CHAIN OF ANTIBODY VRC01 with N72T mutation protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 49984
95 % 12 20 2834
90 % 14 22 2634
70 % 1281 2557 2
50 % 3302 6625 1
40 % 3303 6626 1
30 % 3327 6673 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures