Sequence Similarity Clusters for the Entities in PDB 4LSQ

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 WITH LOOP D AND V5 FROM STRAIN 3415_V1_C1 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 48948
95 % 26 60 614 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 26 60 643
70 % 37 101 323
50 % 37 101 381
40 % 37 101 399
30 % 37 102 409
Entity #2 | Chains: H
HEAVY CHAIN OF ANTIBODY VRC-CH31 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 33128
95 % 2 3 27656 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 2 3 26674
70 % 972 2805 1
50 % 1029 2949 1
40 % 1029 2949 1
30 % 2043 5899 1
Entity #3 | Chains: L
LIGHT CHAIN OF ANTIBODY VRC-CH31 WITH N70D MUTATION protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 49614
95 % 2 3 28356 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 2 3 27343
70 % 788 2290 2
50 % 1002 2908 2
40 % 1002 2908 2
30 % 2044 5899 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4LSP 3 L LIGHT CHAIN OF ANTIBODY VRC-CH31 9606
2 4LSQ 3 L LIGHT CHAIN OF ANTIBODY VRC-CH31 WITH N70D MUTATION 9606
3 4LSR 3 L LIGHT CHAIN OF ANTIBODY VRC-CH31 (N70D MUTATION) 9606