Sequence Similarity Clusters for the Entities in PDB 4LSQ

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 WITH LOOP D AND V5 FROM STRAIN 3415_V1_C1 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 55636
95 % 26 60 609 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 26 60 634
70 % 37 101 318
50 % 37 101 377
40 % 37 101 395
30 % 37 102 404
Entity #2 | Chains: H
HEAVY CHAIN OF ANTIBODY VRC-CH31 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29766
95 % 2 3 25210 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 2 3 24399
70 % 965 2784 1
50 % 1022 2927 1
40 % 1022 2927 1
30 % 2030 5855 1
Entity #3 | Chains: L
LIGHT CHAIN OF ANTIBODY VRC-CH31 WITH N70D MUTATION protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 52744
95 % 2 3 27483 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 2 3 26525
70 % 784 2273 2
50 % 996 2886 2
40 % 996 2886 2
30 % 2031 5855 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures