Sequence Similarity Clusters for the Entities in PDB 4LSP

Entity #1 | Chains: G
HIV-1 CLADE A/E STRAIN 93TH057 GP120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 29 1295
95 % 15 61 615 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 15 61 642
70 % 23 102 322
50 % 23 102 382
40 % 23 102 402
30 % 23 103 414
Entity #2 | Chains: H
HEAVY CHAIN OF ANTIBODY VRC-CH31 protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 34307
95 % 1 3 28579 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 1 3 27556
70 % 773 2883 1
50 % 821 3028 1
40 % 821 3028 1
30 % 1627 6055 1
Entity #3 | Chains: L
LIGHT CHAIN OF ANTIBODY VRC-CH31 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62606
95 % 1 3 28580 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 3 27557
70 % 623 2352 2
50 % 793 2983 2
40 % 793 2983 2
30 % 1628 6055 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures