Sequence Similarity Clusters for the Entities in PDB 4LOP

Entity #1 | Chains: A,B,C,D
Mitogen-activated protein kinase 14 protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 22 1662
95 % 34 261 134 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 1.5
PDBFlex
90 % 34 261 138
70 % 34 255 153
50 % 36 273 170
40 % 47 381 122
30 % 47 381 131
Entity #2 | Chains: K,L,M,N
TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 8136
95 % 1 4 8047 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 1 4 8664
70 % 1 4 8478
50 % 1 4 7906
40 % 1 4 7606
30 % 1 4 7110

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures