Sequence Similarity Clusters for the Entities in PDB 4KZY

Entity #1 | Chains: A
40S Ribosomal Protein SA protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 32149
95 % 4 42 1367 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 42 1398
70 % 4 42 1436
50 % 4 42 1451
40 % 4 42 1504
30 % 4 42 1534
Entity #10 | Chains: J
40S Ribosomal Protein S9 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 70 542
95 % 4 70 734 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 70 772
70 % 42 152 265
50 % 44 167 252
40 % 44 171 254
30 % 44 171 272
Entity #11 | Chains: K
40S Ribosomal Protein S10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 39 1056
95 % 4 41 1376 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 41 1420
70 % 4 41 1447
50 % 4 42 1431
40 % 4 43 1461
30 % 4 43 1496
Entity #12 | Chains: L
40S Ribosomal Protein S11 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 71 522
95 % 4 71 726 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 71 765
70 % 4 72 787
50 % 44 166 253
40 % 44 166 269
30 % 44 166 291
Entity #13 | Chains: M
40S Ribosomal Protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 51 817
95 % 4 63 856 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 63 897
70 % 4 68 849
50 % 4 69 870
40 % 4 69 920
30 % 4 69 955
Entity #14 | Chains: N
40S Ribosomal Protein S13 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 70 534
95 % 4 70 733 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 70 770
70 % 42 157 252
50 % 44 164 262
40 % 44 169 263
30 % 44 169 280
Entity #15 | Chains: O
40S Ribosomal Protein S14 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 59 671
95 % 4 59 914 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 61 922
70 % 42 144 274
50 % 44 166 254
40 % 44 166 272
30 % 44 166 292
Entity #16 | Chains: P
40S Ribosomal Protein S15 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 3667
95 % 4 45 1243 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 45 1282
70 % 4 47 1256
50 % 43 152 315
40 % 43 157 314
30 % 43 157 333
Entity #17 | Chains: Q
40S Ribosomal Protein S16 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 69 561
95 % 4 69 747 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 69 786
70 % 4 72 784
50 % 44 165 256
40 % 44 169 261
30 % 44 170 278
Entity #18 | Chains: R
40S Ribosomal Protein S17 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 44 1071
95 % 4 70 739 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 70 780
70 % 4 71 800
50 % 43 149 317
40 % 43 149 334
30 % 43 149 347
Entity #19 | Chains: S
40S Ribosomal Protein S18 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 71 530
95 % 4 71 719 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 71 766
70 % 42 148 270
50 % 44 159 273
40 % 44 165 275
30 % 44 165 295
Entity #2 | Chains: B
40S Ribosomal Protein S3A protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 30139
95 % 4 44 1272 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 44 1308
70 % 4 44 1340
50 % 41 124 368
40 % 43 131 368
30 % 43 131 379
Entity #20 | Chains: T
40S Ribosomal Protein S19 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 12218
95 % 4 70 745 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 70 783
70 % 4 70 810
50 % 4 72 824
40 % 4 72 864
30 % 6 75 826
Entity #21 | Chains: U
40S Ribosomal Protein S20 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 40 1031
95 % 4 42 1362 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 42 1387
70 % 4 43 1380
50 % 4 45 1328
40 % 4 45 1380
30 % 4 45 1412
Entity #22 | Chains: V
40S Ribosomal Protein S21 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 17968
95 % 4 69 749 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 69 792
70 % 4 70 807
50 % 41 144 331
40 % 41 144 348
30 % 41 144 361
Entity #23 | Chains: W
40S Ribosomal Protein S15A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 71 526
95 % 4 71 721 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 71 760
70 % 43 166 245
50 % 46 175 234
40 % 46 176 246
30 % 46 176 264
Entity #24 | Chains: X
40S Ribosomal Protein S23 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 69 548
95 % 4 73 704 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 74 722
70 % 44 171 231
50 % 44 177 230
40 % 44 177 245
30 % 44 177 262
Entity #25 | Chains: Y
40S Ribosomal Protein S24 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 18845
95 % 4 70 744 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 70 784
70 % 4 71 802
50 % 41 161 290
40 % 41 161 305
30 % 41 161 323
Entity #26 | Chains: Z
40S Ribosomal Protein S25 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 44 930
95 % 4 44 1282 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 44 1317
70 % 4 45 1321
50 % 4 45 1338
40 % 4 46 1373
30 % 4 46 1404
Entity #27 | Chains: a
40S Ribosomal Protein S26 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 29239
95 % 4 35 1593 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 35 1633
70 % 4 36 1620
50 % 6 61 952
40 % 8 63 909
30 % 8 63 942
Entity #28 | Chains: b
40S Ribosomal Protein S27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 70 543
95 % 4 70 738 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 70 779
70 % 41 147 273
50 % 43 159 276
40 % 43 159 294
30 % 43 159 312
Entity #29 | Chains: c
40S Ribosomal Protein S28 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 52 804
95 % 4 52 1080 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 52 1110
70 % 42 158 250
50 % 44 165 257
40 % 44 166 271
30 % 44 166 290
Entity #3 | Chains: C
40S Ribosomal Protein S2 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 31158
95 % 3 3 26236 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 39 1475
70 % 4 41 1462
50 % 4 44 1376
40 % 4 44 1433
30 % 4 44 1467
Entity #30 | Chains: d
40S Ribosomal Protein S29 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 64 604
95 % 4 68 770 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 68 809
70 % 42 141 282
50 % 44 152 298
40 % 44 152 318
30 % 44 152 335
Entity #31 | Chains: e
40S Ribosomal Protein S30 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 3693
95 % 4 21 2667 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 21 2743
70 % 4 21 2777
50 % 4 22 2671
40 % 4 22 2700
30 % 4 22 2671
Entity #32 | Chains: f
40S Ribosomal Protein S27A protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 36 1318
95 % 4 39 1468 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 39 1466
70 % 7 65 844
50 % 9 69 825
40 % 9 72 827
30 % 9 72 863
Entity #33 | Chains: g
40S Ribosomal Protein RACK1 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 70 516
95 % 5 70 709 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 5 70 747
70 % 6 72 753
50 % 49 150 296
40 % 51 156 281
30 % 51 157 301
Entity #34 | Chains: i
18S Ribosomal RNA rna, length: 1863 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #35 | Chains: l
human initiation factor eIF1 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37169
95 % 2 2 38441 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 33574
70 % 2 2 30072
50 % 2 9 8288
40 % 2 9 7934
30 % 2 9 7425
Entity #36 | Chains: n
human initiation factor eIF1A protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 34458
95 % 2 3 28611 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 3 27595
70 % 2 3 22842
50 % 2 10 7686
40 % 2 10 7445
30 % 2 10 6915
Entity #4 | Chains: D
40S Ribosomal Protein S3 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 28 1887
95 % 4 66 801 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 66 837
70 % 4 67 868
50 % 43 150 318
40 % 43 150 335
30 % 43 150 348
Entity #5 | Chains: E
40S Ribosomal Protein S4X protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 17733
95 % 4 58 929 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 70 774
70 % 41 150 268
50 % 43 164 264
40 % 43 164 282
30 % 43 169 287
Entity #6 | Chains: F
40S Ribosomal Protein S5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 71 531
95 % 4 71 730 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 71 758
70 % 4 80 688
50 % 44 168 250
40 % 44 168 264
30 % 44 168 284
Entity #7 | Chains: G
40S Ribosomal Protein S6 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 69 555
95 % 4 70 741 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 4 70 782
70 % 4 72 789
50 % 42 151 324
40 % 42 156 324
30 % 42 156 339
Entity #8 | Chains: H
40S Ribosomal Protein S7 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 69 560
95 % 4 70 742 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 70 775
70 % 4 71 797
50 % 41 155 304
40 % 41 155 325
30 % 43 158 319
Entity #9 | Chains: I
40S Ribosomal Protein S8 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 18516
95 % 4 70 735 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 70 773
70 % 4 70 809
50 % 43 158 283
40 % 43 163 283
30 % 43 163 303

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures