Sequence Similarity Clusters for the Entities in PDB 4KZD

Entity #1 | Chains: H
BL3-6 Fab antibody, heavy chain protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 8574
95 % 4 10 6350 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.7
PDBFlex
90 % 100 337 16
70 % 824 2965 1
50 % 877 3117 1
40 % 877 3117 1
30 % 1735 6228 1
Entity #2 | Chains: L
BL3-6 Fab antibody, light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 10739
95 % 53 220 74 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 160 553 4
70 % 667 2416 2
50 % 845 3067 2
40 % 845 3067 2
30 % 1736 6228 1
Entity #3 | Chains: R
RNA (84-MER) rna, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6B14 1 H Heavy chain of Fab BL3-6S97N 10090
2 6DB8 1 H Fab-Heavy chain 32630
3 6B3K 1 H Heavy chain of Fab BL3-6 10090
4 4KZD 1 H BL3-6 Fab antibody, heavy chain 10090
5 6DB9 2 H Fab-Heavy-Chain 32630
6 4KZE 1 H BL3-6 Fab antibody, heavy chain 10090
7 4Q9Q 1 H Fab BL3-6, HEAVY CHAIN 10090
8 6U8K 2 D, F, H Heavy chain of Fab HCV3 Heavy chain of Fab HCV3 9606
9 4Q9R 1 H Fab BL3-6, HEAVY CHAIN 10090
10 3IVK 2 A, H Fab heavy chain man 10090