Sequence Similarity Clusters for the Entities in PDB 4KZD

Entity #1 | Chains: H
BL3-6 Fab antibody, heavy chain protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 7936
95 % 4 9 8976 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.7
PDBFlex
90 % 100 328 18
70 % 815 2928 1
50 % 868 3079 1
40 % 868 3079 1
30 % 1717 6153 1
Entity #2 | Chains: L
BL3-6 Fab antibody, light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 9488
95 % 50 213 78 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 156 538 4
70 % 658 2391 2
50 % 836 3030 2
40 % 836 3030 2
30 % 1718 6153 1
Entity #3 | Chains: R
RNA (84-MER) rna, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures