Sequence Similarity Clusters for the Entities in PDB 4KV5

Entity #1 | Chains: A,B,C,D
Transforming growth factor beta-1 proprotein protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 3536
95 % 2 6 4501 Flexibility: Medium
Max RMSD: 7.6, Avg RMSD: 4.1
PDBFlex
90 % 2 6 4563
70 % 8 15 2202
50 % 8 15 2262
40 % 8 15 2281
30 % 17 24 1525
Entity #2 | Chains: E,G,H,J
Single-chain variable fragment GC1009 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 26130
95 % 1 1 19703 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 19294
70 % 29 34 701
50 % 4918 6328 1
40 % 4929 6341 1
30 % 4964 6387 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures