Sequence Similarity Clusters for the Entities in PDB 4KRO

Entity #1 | Chains: A
Epidermal growth factor receptor protein, length: 624 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 17670
95 % 6 12 5832 Flexibility: High
Max RMSD: 25.7, Avg RMSD: 10.9
PDBFlex
90 % 6 12 5664
70 % 6 12 5812
50 % 6 12 5596
40 % 20 38 1332
30 % 20 38 1349
Entity #2 | Chains: B
Nanobody/VHH domain EgA1 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 43993
95 % 2 2 31864 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 2 2 40518
70 % 411 535 7
50 % 590 808 6
40 % 592 811 6
30 % 868 1213 6
Entity #3 | Chains: C
Cetuximab light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 31 810
95 % 36 37 844 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 39 40 811
70 % 1871 2368 2
50 % 2328 3003 2
40 % 2328 3003 2
30 % 4720 6095 1
Entity #4 | Chains: D
Cetuximab heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 31 823
95 % 38 39 836 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.6
PDBFlex
90 % 38 39 870
70 % 2249 2903 1
50 % 2360 3048 1
40 % 2360 3048 1
30 % 4721 6095 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures