Sequence Similarity Clusters for the Entities in PDB 4KOD

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
Transitional endoplasmic reticulum ATPase protein, length: 489 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4117
95 % 11 14 921 Flexibility: Medium
Max RMSD: 10.8, Avg RMSD: 5.3
PDBFlex
90 % 11 14 967
70 % 12 15 953
50 % 12 15 1001
40 % 12 15 1043
30 % 12 15 1086

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4KO8 1 A, B Transitional endoplasmic reticulum ATPase UNP residue 1-481 9606 3.6.4.6 | Details
2 3HU3 1 A, B Transitional endoplasmic reticulum ATPase residues 1-481 9606 3.6.4.6 | Details
3 5DYG 1 A Transitional endoplasmic reticulum ATPase UNP residues 1-460 9606 3.6.4.6 | Details
4 5IFS 2 B, D Transitional endoplasmic reticulum ATPase 9606 3.6.4.6 | Details
5 5KIY 1 A Transitional endoplasmic reticulum ATPase N-terminal residues 1-460 9606 3.6.4.6 | Details
6 1E32 1 A P97 N TERMINAL DOMAIN AND D1 AAA DOMAIN, RESIDUES 1-458 10090 3.6.4.6 | Details
7 3HU1 1 A, B, C, D, E, F Transitional endoplasmic reticulum ATPase residues 1-481 9606 3.6.4.6 | Details
8 4KLN 1 A, B, C, D, E, F Transitional endoplasmic reticulum ATPase UNP residue 1-481 9606 3.6.4.6 | Details
9 1S3S 1 A, B, C, D, E, F Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin containing protein) (VCP) [Contains: Valosin] ND1 domains (1-458) 10090 3.6.4.6 | Details
10 3HU2 1 A, B, C, D, E, F Transitional endoplasmic reticulum ATPase residues 1-481 9606 3.6.4.6 | Details
11 4KOD 1 A, B, C, D, E, F, G, H, I, J, K, L Transitional endoplasmic reticulum ATPase UNP residue 1-481 9606 3.6.4.6 | Details
12 5KIW 1 A, B Transitional endoplasmic reticulum ATPase N-terminal residues 1-460 9606 3.6.4.6 | Details
13 6HD0 1 A, B, C, T, U, V Transitional endoplasmic reticulum ATPase 9606 3.6.4.6 | Details
14 5DYI 1 A, B, C, D, E, F, G, H, I, J, K, L Transitional endoplasmic reticulum ATPase UNP residues 1-481 9606 3.6.4.6 | Details