Sequence Similarity Clusters for the Entities in PDB 4KOD

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
Transitional endoplasmic reticulum ATPase protein, length: 489 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4043
95 % 11 13 1064 Flexibility: Medium
Max RMSD: 10.8, Avg RMSD: 5.3
PDBFlex
90 % 11 13 1095
70 % 11 13 1109
50 % 11 13 1150
40 % 11 13 1181
30 % 11 13 1230

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures