Sequence Similarity Clusters for the Entities in PDB 4K23

Entity #1 | Chains: H
anti-uPAR antibody, heavy chain protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40589
95 % 1 2 35197 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 2 33732
70 % 145 2965 1
50 % 157 3117 1
40 % 157 3117 1
30 % 308 6228 1
Entity #2 | Chains: L
anti-uPAR antibody, light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 18581
95 % 8 39 1105 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 1.9
PDBFlex
90 % 8 55 783
70 % 116 2416 2
50 % 146 3067 2
40 % 146 3067 2
30 % 309 6228 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures