Sequence Similarity Clusters for the Entities in PDB 4JY4

Entity #1 | Chains: B
PGT121 heavy chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 31541
95 % 2 3 26529 Flexibility: Medium
Max RMSD: 9.1, Avg RMSD: 6.3
PDBFlex
90 % 3 5 14340
70 % 1653 2805 1
50 % 1744 2949 1
40 % 1744 2949 1
30 % 3478 5899 1
Entity #2 | Chains: A
PGT121 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66644
95 % 2 3 26530 Flexibility: Medium
Max RMSD: 9.8, Avg RMSD: 6.9
PDBFlex
90 % 3 21 2351
70 % 327 584 7
50 % 1712 2908 2
40 % 1712 2908 2
30 % 3479 5899 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4JY5 1 L PGT122 light chain Fab 9606
2 4FQC 2 L Fab light chain 9606
3 4JY4 2 A PGT121 light chain Fab 9606
4 4FQ1 2 L Fab light chain 9606
5 4TVP 3 L PGT122 Light chain 9606
6 5FYJ 6 L PGT122 PGT122 ANTIBODY FAB LIGHT CHAIN 9606
7 5U7M 6 L PGT122 FAB LIGHT CHAIN 9606
8 5FYK 6 L PGT122 PGT122 ANTIBODY FAB LIGHT CHAIN 9606
9 5FYL 6 L PGT122 ANTIBODY FAB LIGHT CHAIN 9606
10 5UTF 3 L PGT122 Light chain 9606
11 5U7O 6 L PGT122 FAB LIGHT CHAIN 9606
12 5UTY 6 L PGT122 Fab light chain 9606
13 6DE7 6 L PGT122 Light Chain 9606
14 6B0N 5 L PGT122 light chain 9606
15 5I8H 3 J, L PGT122 Fab light chain 9606
16 5D9Q 3 E, L, M PGT122 light chain,Ig lambda-3 chain C regions 9606
17 5WDU 5 B, K, S bnAb PGT122 Fab light chain 9606
18 4NCO 3 C, G, K PGT122 light chain Fab 9606
19 6CDE 4 8, N, n PGT122 Light Chain 9606
20 3JCB 2 B Antibody 36D5 light chain Fab 9606
21 3JCC 2 B Antibody 36D5 light chain Fab 9606