Sequence Similarity Clusters for the Entities in PDB 4JY4

Entity #1 | Chains: B
PGT121 heavy chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29346
95 % 2 3 24912 Flexibility: Medium
Max RMSD: 9.1, Avg RMSD: 6.3
PDBFlex
90 % 3 5 14278
70 % 1642 2784 1
50 % 1733 2927 1
40 % 1733 2927 1
30 % 3457 5855 1
Entity #2 | Chains: A
PGT121 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66219
95 % 2 3 26321 Flexibility: Medium
Max RMSD: 9.8, Avg RMSD: 6.9
PDBFlex
90 % 3 21 2311
70 % 325 579 7
50 % 1702 2886 2
40 % 1702 2886 2
30 % 3458 5855 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures