Sequence Similarity Clusters for the Entities in PDB 4JU0

Entity #1 | Chains: A,C,E,G,I,K
Hemagglutinin protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 6458
95 % 15 19 639 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.8
PDBFlex
90 % 15 20 652
70 % 50 70 247
50 % 150 184 86
40 % 312 379 15
30 % 312 379 21
Entity #2 | Chains: B,D,F,H,J,L
Hemagglutinin protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 11 903
95 % 15 19 634 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 0.9
PDBFlex
90 % 45 61 245
70 % 152 185 50
50 % 304 365 13
40 % 304 365 19
30 % 309 376 23

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures