Sequence Similarity Clusters for the Entities in PDB 4JTX

Entity #1 | Chains: A,C,E,G,I,K
Hemagglutinin protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 5667
95 % 10 19 622 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.8
PDBFlex
90 % 10 20 626
70 % 40 70 239
50 % 130 184 84
40 % 274 379 13
30 % 274 379 23
Entity #2 | Chains: B,D,F,H,J,L
Hemagglutinin protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 13 725
95 % 10 19 615 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 0.9
PDBFlex
90 % 36 61 239
70 % 132 185 47
50 % 269 365 13
40 % 269 365 19
30 % 274 376 24

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures