Sequence Similarity Clusters for the Entities in PDB 4JM4

Entity #1 | Chains: H
PGT 135 Heavy Chain protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 34844
95 % 2 3 28861 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.8
PDBFlex
90 % 2 3 27821
70 % 301 2784 1
50 % 322 2927 1
40 % 322 2927 1
30 % 634 5855 1
Entity #2 | Chains: L
PGT 135 Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 30991
95 % 2 3 26073 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.7
PDBFlex
90 % 2 3 25236
70 % 246 2273 2
50 % 307 2886 2
40 % 307 2886 2
30 % 635 5855 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures