Sequence Similarity Clusters for the Entities in PDB 4JFX

Entity #1 | Chains: A,L
Fab light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 12541
95 % 4 5 12751 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 4 5 12575
70 % 314 2416 2
50 % 394 3067 2
40 % 394 3067 2
30 % 810 6228 1
Entity #2 | Chains: B,H
Fab heavy chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26696
95 % 4 5 12595 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 49 337 16
70 % 385 2965 1
50 % 410 3117 1
40 % 410 3117 1
30 % 811 6228 1
Entity #3 | Chains: P
Phosphopeptide protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4JFX 2 B, H Fab heavy chain 9606
2 4JFY 2 B, H Fab heavy chain 9606