Sequence Similarity Clusters for the Entities in PDB 4JFX

Entity #1 | Chains: A,L
Fab light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 13389
95 % 4 5 12573 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 4 5 12376
70 % 308 2391 2
50 % 388 3030 2
40 % 388 3030 2
30 % 798 6153 1
Entity #2 | Chains: B,H
Fab heavy chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28763
95 % 4 5 12559 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 49 328 18
70 % 379 2928 1
50 % 404 3079 1
40 % 404 3079 1
30 % 799 6153 1
Entity #3 | Chains: P
Phosphopeptide protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures