Sequence Similarity Clusters for the Entities in PDB 4JFD

Entity #1 | Chains: A
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 139 217 73
95 % 182 270 69 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 212 325 43
70 % 530 790 6
50 % 531 795 8
40 % 567 839 9
30 % 571 862 12
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 470 685 2
95 % 503 733 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 510 748 3
70 % 668 1037 4
50 % 682 1061 4
40 % 682 1061 4
30 % 682 1061 8
Entity #3 | Chains: C
Melanoma peptide protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
High Affinity TCR Alpha Chain protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 49526
95 % 2 5 16338 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.7
PDBFlex
90 % 2 8 11009
70 % 107 249 106
50 % 149 381 75
40 % 149 381 91
30 % 149 381 90
Entity #5 | Chains: E
High Affinity TCR Beta Chain protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 18474
95 % 2 8 11115 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 2 9 7721
70 % 2 9 7556
50 % 153 394 68
40 % 153 394 80
30 % 153 394 85

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures