Sequence Similarity Clusters for the Entities in PDB 4JDV

Entity #1 | Chains: A,H
Fab heavy chain protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 34197
95 % 1 8 5782 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.5
PDBFlex
90 % 5 56 670
70 % 123 2928 1
50 % 135 3079 1
40 % 135 3079 1
30 % 263 6153 1
Entity #2 | Chains: B,L
Fab light chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 5545
95 % 5 106 237 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.8
PDBFlex
90 % 14 236 78
70 % 95 2391 2
50 % 123 3030 2
40 % 123 3030 2
30 % 264 6153 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures