Sequence Similarity Clusters for the Entities in PDB 4JAM

Entity #1 | Chains: A,H
ANTIGEN BINDING FRAGMENT OF HEAVY CHAIN of CH103 protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19309
95 % 1 3 17093 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 2.0
PDBFlex
90 % 1 6 5168
70 % 111 2784 1
50 % 122 2927 1
40 % 122 2927 1
30 % 237 5855 1
Entity #2 | Chains: B,L
ANTIGEN BINDING FRAGMENT OF LIGHT CHAIN of CH103 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24045
95 % 1 4 9105 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.2
PDBFlex
90 % 2 40 868
70 % 21 579 7
50 % 111 2886 2
40 % 111 2886 2
30 % 238 5855 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures