Sequence Similarity Clusters for the Entities in PDB 4J9Y

Entity #1 | Chains: B
Small conductance calcium-activated potassium channel protein 2 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 9329
95 % 1 13 6320 Flexibility: No
Max RMSD: 2.7, Avg RMSD: 0.5
PDBFlex
90 % 1 13 6342
70 % 1 13 6260
50 % 1 13 5981
40 % 1 13 5801
30 % 1 13 5556
Entity #2 | Chains: R
Calmodulin protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 182 95
95 % 9 228 74 Flexibility: Medium
Max RMSD: 20.3, Avg RMSD: 9.8
PDBFlex
90 % 9 235 79
70 % 14 240 88
50 % 14 249 105
40 % 14 360 67
30 % 14 361 68

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures